Does anyone know of a bioinformatic tool to find COGs in prokaryotic genomes?

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Prashanth N Suravajhala

Dear Alexandra

PGDBj has some options: http://pgdbj.jp/en/ortholog-db.html

However, the normal COGnitor should do the task for you. You can still find orthologs across all eukaryotic spp.

Best

Prash

Vasvi Chaudhry

Hi,

You can find COG classes by

http://www.ncbi.nlm.nih.gov/Structure/bwrpsb/bwrpsb.cgi

Olugbenga Oluwagbemi

Hi Alexandra,

You will find PGAT very useful. Check this weblink: http://tools.nwrce.org/pgat/

Kind regards

Olugbenga