I've just got fragment analysis up and running. I'm using the MapMarker 1000-ROX size standard, which doesn't come as a built in standard in GeneMapper. I've tried manually adding it, but GeneMapper doesn't seem to be able to size using it.
I've also got auto-binning up and running, but would ideally like to create bins for each 3 bases (CAG repeat units) and rename them CAG repeat 1, 2 etc. so that the genotyping outputs the repeat number already interpreted. Does anyone know how to do this?
Thanks!
You can try to create a new size standard using GeneMapper ID Software.
You can create custom size standard in GeneMapper. You have to go in Tools>GeneMapper manager>Size standard. Then you can choose "New" then tick "Basic/Advanced" and you can chose the color and the sizes of the peaks. You will have to give the name of this Size Standard in your plate protocol as well if you want that the GeneMapper analysis use the right size settings for analysis.
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