Any recommendations for software to visualize SNPs of a circular DNA sequence (e.g., plasmid or virus) from two aligned FASTA sequences?
Did you try MEDEA? http://www.broadinstitute.org/annotation/medea/circular/
@Luca I have not, but I will give it a try! Thanks
Circos (http://circos.ca/) is a very popular tool based on a circular layout of plots
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