I am trying to make LD plot using Haploview from 1000 genomes project data for a list of SNPs. As usual there are problems with input files, I was trying the VCF to PED converter from 1000 genomes websites to make .ped and .info files but when trying to load on Haploview  (under PLINK format) an error raised: Improper map file formatting on line 1. 

I wonder if anyone can help me to circumvent this error.

Any comments would be highly appreciated.

Thank you All.

Regards

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