Does anybody know any software which can convert pictures from MHA format to NIFTI or DCM format?
I can't report from a lot of experience in that particular case my self, but I think the
- Insight Segmentation and Registration Toolkit , short ITK
might help you out. See:
- http://www.itk.org/itkindex.html
- http://www.itk.org/ItkSoftwareGuide.pdf
Hey Ziba,
If you have ITK just use:
import Skimage.io As Io
path = '$PATH/*.mha' #path to your MHA file
outpath = '$PATH/*.nii'
img = io.imread(path,plugin='simpleitk')
io.imsave('outpath',img,plugin='simpleitk')
if not, first install the necessary ITK wrapping:
pip Install Scikit-image
pip Install simpleITK Or Easy_install-U simpleITK
and then run the other 5 lines ;)
You could do it with Matlab also, check the stackflow/fileexchange on the matlabcentral for some usefull tools ;) such as: http://www.mathworks.com/matlabcentral/fileexchange/29344-read-medical-data-3d
Hope this helps,
Gabriel
check out this link below, it might be a help
http://www.mccauslandcenter.sc.edu/mricro/mricron/dcm2nii.html
Clara Framework NVIDIA does, but it is a tool that goes much further than that.
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