Does anybody know a proper package in R for quantitative genetics analysis?

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Deepak Karthik

EvolQG package provides functions for calculation of relevant evolutionary statistics

Jie Liu

There may be some hint from the recent special issue in Molecular Ecology Resources (http://onlinelibrary.wiley.com/doi/10.1111/men.2017.17.issue-1/issuetoc), which mainly focus on the application of R in population genomics.

Sheng Luan

ASReml-R is a good package for classical quantitative genetics using AIREML. MCMCGLMM is also a good pacakge. rrBLUP, BGLR are also good packages after you convert your pedigree to inverse matrix of A.

Anna Wolc

MCMCglmm is a good R package to estimate variance components, but there are also other specialized programs which are free for research for example BLUPF90 family written by Ignacy Misztal or Wombat by Karin Meyer

Mohammad Ameri

Thank you all guys for your suggestions.

Michael C Neale

You could analyze such data with the R package OpenMx. Disclaimer: I am a member of the OpenMx developer team.

Amir Kasnavi

Hello I don't have work with OpenMx . But I don't think hard work.