Not to my knowledge. What you can do however is: a) come up with a distance matrix which can then be imported in ABGD (http://wwwabi.snv.jussieu.fr/public/abgd/abgdweb.html)

for calculating the barcode gap and associating OTUs to your clouds of genotypes or b) from the same matrix or microsatellite data, you can compute an ultrametric, fully bifurcating  tree e.g in MEGA and then import it into the SPLITS Package in  R and test the GMYC algorithmic species delineation procedure.

Answer come maybe too late:)

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