07 October 2022 1 3K Report

I need to dock a possible active compound on a structure that has on the active site a co-substrate (FAD) on MOE. For now MOE just ignore the FAD and overlap the poses of the ligand on top.

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Reliable transfection method for Jurkat cells?

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How do I find shoreline's evolution throughout the years map using Landsat 8?

I'm doing my first research and I can't find a way to see the shoreline evolution.

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Adsorption of carboxylic acid on TiO2 (anatase) Nps surface, physisorption or chemisorption ?

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Can anyone help me with the preparation of a solution of Methyl Jasmonate?

Hi, I would like to set up an experiment with some plants sprayed with an aqueous solution of 200 μM Methyl Jasmonate with 0.025% Zipper surfactant. From the Sigma/Merch website I see I can buy...

05 February 2024 8,534 1 View

Where and how can I get the EEG data (V-ERP or auditory-ERP) for Alzheimer's disease?

For my research, I need visual and/or auditory event related potential, EEG data from normal patients and patients with Alzheimer's disease. Can anyone suggest where I can find them?

29 September 2023 3,831 3 View

Which are the effects of carbon on the liquid phase sintering of W-Fe-Ni?

In the liquid phase sintering of Tungsten-Iron-Nickel powder compacts, could the presence of carbon (between 0.6% and 1.5%) significantly influence the final microstructure by altering the...

30 July 2023 4,368 1 View

What is the best way to transport biogas from anaerobic digestion plants to a centralised upgrading plant?

Good morning, everyone! We are doing a spatial analysis to identify the best sites to install centralised upgrading plants. These plants should collect the biogas produced in several anaerobic...

28 June 2023 1,811 2 View

What should i do with count microbiome data?

Hello everybody, I'm a master degree student. I'm working with 16S data on some environmental samples. After all the cleaning, denoising ecc... now I have an object that stores my sequences,...

25 May 2023 6,380 2 View

Dynamic light scattering: Volume plot shows one peak, while intensity plot shows two peaks. How can I quantify the two different size distributions?

I measured by DLS the size of a TiO2 nanoparticles suspension sample to compare the results against a TEM measurement (5-6nm). As I expected I got different results from the two experiments due to...

24 May 2023 7,592 8 View

Can I use IEEE 14 bus system as energy management systems for microgrid?

I want to use IEEE 14 bus system to integrate two microgrids in the generator buses. My research would be based on Model predictive control to schedule charge and discharge on on BESS of the...

26 March 2023 1,574 3 View

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Can anyone provide me with molecular docking softwares/ websites?

Molecular docking software/ websites?

02 August 2024 8,704 7 View

AutoGrid and Autodock 4.2.6 window opens for 1 second then closes and there is no output files?

Good day, I am a student trying to work on Autodock for a project regarding Ligand-DNA interaction so i am quite new to molecular docking. i have followed tutorials and did all the steps...

28 July 2024 2,136 4 View

Is it possible to dock more than one drug in the same active site or pocket of a protein to study synergistic/antagonistic/additive properties?

I wanted to know whether we can observe the synergistic/antagonistic/additive properties of combinations or mixtures of compounds through docking analysis. But during docking preparation any...

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What is the main factor involve in higher binding score performing molecular docking?

A molecule shows the -11.6 kcal/mol and second one -8.0 kcal/mol so why molecule (A) revealed higher binding score. Please explain major factor involve in it.

21 July 2024 954 5 View

In silico can we join two ligands for docking....?

I have performed docking of proteins with two ligands, both ligands show affinity. I want to check the effect if we join both ligands and perform docking

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How to extract binding energy from pv.maegz file without using Schrodinger?

I have conducted virtual screening using Schrödinger on a database of 17,000 molecules. Unfortunately, I cannot use the system with the Schrödinger license at the moment. I am trying to find a way...

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How to calculate theoretical Ki from the docking results?

I have used Schrödinger (Glide) for docking

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Can we analyse RMSD for peptide-HLA docking and binding affinity for peptide-HLA to TCR docking, in a peptide-HLA-TCR docking ?

In the peptide-HLA-TCR docking process, can we express the result of peptide-HLA docking in RMSD and for peptide-HLA to TCR docking, can results be expressed in binding affinity?

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Looking for a bioinformatics expert especially one who has expertise in Nanoparticles docking ?

Silver Nanoparticles docking with alpha amylase and alpha glusidase .

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How to prepare materials before protein-peptide or protein-protein docking?

Hi all, I am conducting research on screening peptides (20-35 amino acids) with potential for treating dengue fever through protein-peptide docking methods. In the protein database, I found the...

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