I have a few confusions of using Pierce Fab2 preparation kit. Sometimes, the spin column doesn't look properly compacted after centrifuging( then I centrifuged with high speed more times and somehow looked ok). And fixing and adding full IgG on pepsin agarose tube has made me confused since it is my first time using it. The pepsin with resin get dissolved with the antibody I add, then how it separates the fragmented one, I am not sure if my adding antibody on Pepsin Agarose slurry is wrong. I couldn't find desired Fab2 fragment , separated from the full IgG after following the full procedure. MALDI data shows,there is no full IgG or Fab or Fab2 or Fc signal coming from sample collected from the kit at the end of the procedure.
The kit components are: Sufficient For: 10 antibody samples, each containing 0.25 to 4 mg IgG • Pierce Pepsin Agarose, 1.25 mL • F(ab')2 Digestion Buffer, 120 mL • NAb Protein A Plus Spin Column, 1 mL, 1 column • PBS Packs (each makes 500 mL), 2 packs • IgG Elution Buffer, 120 mL • Zeba Desalt Spin Columns, 7K MWCO, 2 mL, 10 columns • Spin Columns, 0.8mL, 10 columns • Microcentrifuge Tubes, 2 mL, 30 tubes
The used kit link is: https://www.thermofisher.com/order/catalog/product/44988
If any of you are familiar with the process, please let me know. Thank you.