Hi , I am working on dimer metalloprotein system in which I want to apply distance restraints to restrain the distance of coordination bond between metal and Ligand oxygen but I can not understand what type of interactions as given in GROMACS should I use . I have applied distance restraints as follows but it does not work.
#ifdef disres
[intermolecular_interactions ]
[ distance_restraints ]
; ai aj type index type low up1 up2 fac
864 5363 6 1 1 0.00000 0.1900000 0.2160000 1.0
#endif
kindly guide.
Thanks in adavence