Please help me understanding the difference in Binary Diploid, Binary Haploid, and Haploid data types in GenAlex 6.5. I want use a binary dataset (RAPD) from fungal species which has a haploid vegetative phase. What would be the best option to use?
In GenAlex 6.5, the main difference between binary diploid and binary haploid data types lies in the ploidy level of the organisms being analyzed. Binary diploid data refers to organisms with two sets of chromosomes, while binary haploid data refers to organisms with only one set of chromosomes. These different data types allow researchers to analyze genetic variation and population structure in different types of organisms, depending on their ploidy level. The binary diploid data type is commonly used for analyzing genetic variation and population structure in diploid organisms such as humans, mammals, and most plants. On the other hand, the binary haploid data type is typically used for analyzing haploid organisms such as fungi, algae, and some plants. By distinguishing between these data types, researchers can tailor their analyses to the specific genetic characteristics of the organisms they are studying.
In other ways, In GenAlex 6.5, the Binary Diploid data type represents individuals with two sets of chromosomes, where each allele is coded as either 0 or 1. On the other hand, the Binary Haploid data type represents individuals with a single set of chromosomes, where each allele is also coded as either 0 or 1. The Haploid data type, on the other hand, represents individuals with a single set of chromosomes, but alleles are coded as integers instead of binary values.
Since your dataset consists of fungal species with a haploid vegetative phase, it would be best to use the Binary Haploid data type in GenAlex 6.5 for your analysis. This will allow you to accurately represent the genetic information of your samples and analyze them accordingly.
Dear Abera,
Thank you very much for the most clear and elaborative response. It saved me a lot of reading time.
Chandima
Dear Dr. Chandima Ariyarathna,
I would like to thanks for your satisfaction to my answers.
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