I have a dataset of COI sequences and I'd like to obtain Bayesian Skyline Plots (BSPs) with BEAST for my populations. I made 5 replicates runs obtaining 5 .log and 5 .trees files. I used LogCombiner 2.2.0 to obtain single .log and .trees files from the 5 replicates, in order to construct the BSPs with Tracer. LogCombiner was able to construct a combo file for trees, but it did not for .log files. The program stops without producing any file and without giving any error message. Actually it made nothing....! Any suggestion or hint?
Jip its a bug! I had the same problem and solved it by using an older version of LogCombiner.
I sometimes had the problem with the language/area setting of the computer. For Logcombiner it needs to be English, and it did not work properly when it was set to German. That is because of the different usage of . and , in numbers.
Thanks everybody! LogCombiner seems to work when I use an old version (1.7).
Agreed, I can only get 1.7.5 to work - I have tried 2.1.2, 2.2.0, 2.2.1 and 2.3.0, and this includes when increasing memory allocation to 128gb on a cluster (with 2.1.2 and 2.2.0).
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