Hi, I'm working on E. coli O157:H1 bacteria isolated from vegetables... how can I do a genetic confirmatory test? PCR but with which specific gene primer?! if there is someone who has worked on it, help me please with kind regards.
To confirm the presence of E. coli O157:H7, you can perform a Polymerase Chain Reaction (PCR) test with specific gene primers. Here are some options:
H7 Serology and Toxin Testing: Confirmation of E. coli O157:H7 requires identification of the H7 flagellar antigen. This is usually performed by reference laboratories, although some clinical laboratories do H7 testing.
iQ-Check E. coli O157:H7 PCR Detection Kit: This kit uses an optimized system of primers and probes to ensure high specificity and eliminate cross-reactions with close strains such as E. coli O55.
Specific Primers for E. coli Genes: You can use specific primers for different genes of E. coli. For example, the pal gene of E. coli (280 bp), eaeA gene of EHEC (360 bp), stx1 (180 bp), and stx2 (255 bp).
Please note that these are just a few options, and the best approach may depend on your specific needs and resources.
Detection of E. coli O157:H7 bacteria isolated from vegetables can be done using various methods. Here are some commonly used techniques:
Culture-based methods: This involves isolating the bacteria from the vegetable sample and growing them on selective media. E. coli O157:H7 can be identified based on its characteristic colony morphology and biochemical tests.
Polymerase Chain Reaction (PCR): PCR is a molecular technique that amplifies specific DNA sequences. Specific primers targeting genes unique to E. coli O157:H7 can be used to detect the presence of the bacteria in the vegetable sample.
Enzyme-Linked Immunosorbent Assay (ELISA): ELISA is an immunological method that uses antibodies to detect specific antigens. Antibodies specific to E. coli O157:H7 can be used to capture and detect the bacteria in the vegetable sample.
Immunomagnetic separation (IMS): IMS involves using magnetic beads coated with antibodies specific to E. coli O157:H7. These beads can bind to the bacteria, allowing for their separation and subsequent detection.
Next-generation sequencing (NGS): NGS technologies can be used to sequence the DNA of the bacterial sample. By comparing the obtained sequences to known E. coli O157:H7 genomes, the presence of the bacteria can be confirmed.
It is important to note that these methods may require specialized equipment and expertise, and the choice of method depends on factors such as sensitivity, specificity, and available resources.
Lyudmil Antonov Aaron Laud Yes, sirs, I ordered several specific primers and now I have got a standard strain of E coli O157... I hope I'll find the gap in the next trial of a PCR reaction
Hussain Ali Rzoqy surely sir, I was cultured and identified the isolates.. but I couldn't characterize between E coli O157 H7 and other species until now.
Many thanks for your helpful discussion and opinions.