I have a rather small/medium-sized phylogeny (53 taxa) and I am looking for a decent tree viewer and also a program to produce a quality figure for the upcoming publication.
Cheers,
Panos
Thank you both. already trying figtree. I am a Linux user and I don't like mega that much...I will also definitely check ggtree!
Great, had not heard about Newick Utilities before. Inkscape I have already used extensively! Thank you again Artur!
Thanx Niko, I will check your recommendations. I only made an ML tree. Will refine it in inkscape!
Figtree and Dendroscope are good GUI applications. However, if you are familiar with R, I recommend to use the ape library to make nice plots https://cran.r-project.org/web/packages/ape/index.html
I can also recommend the online application iTOL (https://itol.embl.de).
Thank you all for the help! It's a good thread now for anyone looking for such tools :)
Mega v7 is good, fig tree is great, Geneious gives out good trees too. It all depends on how well you would liek to show the separation and on the number of sequences you have.
Mega v7 is good, fig tree is great, Geneious gives out good trees too. It all depends on how well you would like to show the separation and on the number of sequences you have.
I recommend iTOL : interactive Tree of Life , please see the link http://itol2.embl.de
I would recommend CLC which is easy to use.It is a click based software. https://www.qiagenbioinformatics.com/products/clc-main-workbench/
Hi! I am studying D3 js right now. You can do almost anything with this software that use Javascript. Really is very good.
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