Panagiotis Provataris

5 Questions 7 Answers 0 Followers

Questions related from Panagiotis Provataris

How do I correct for phylogenetic nonindependence between a binary/multistate categorical variable (independent) and a continuous depedent variable?

Dear community, I am rather new to phylogenetic comparative methods and seek your advice. I want to compare a continuous trait (dependent) between species belonging to either groupA and groupB...

23 September 2020 1,711 4 View

How can I remove false positives using the calculated bisulfite conversion rate in a WGBS experiment?

Dear community members, We have available WGBS data for a species. We used Bismark to map the reads to the reference genome. Unmethylated lambda phage DNA was spiked-in, to estimate the bisulfite...

19 July 2018 4,214 2 View

Could you recommend software for viewing phylogenetic trees and for creating publication ready figures of trees?

I have a rather small/medium-sized phylogeny (53 taxa) and I am looking for a decent tree viewer and also a program to produce a quality figure for the upcoming publication. Cheers, Panos

13 June 2018 6,436 14 View

Tools for de novo orthology prediction among genomes. What to choose?

Hello community, I am looking for an easy-to-use tool to identify 1:1 orthologs among the gene sets of 50 species (whole genomes are available). Could you recommend any tools that will do this...

26 April 2018 6,809 3 View

Can I remove taxa from pre-existing phylogeny before running a PGLS analysis?

Hello all, I want to run a PGLS analysis. I have a phylogeny with branch lengths, but I want to run the PGLS analysis for a slightly smaller subset of taxa than the ones contained in the...

26 June 2017 7,475 0 View