I have a been have having a problem with coupling my Antibody to magnetic beads, I have used both a kit (Pierce IP and Co-IP magnetic beads kit) and the traditional protein A magnetic beads.
Have you checked the binding affinity of protein A/G to your type of antibody? Some antibodies will not even bind to those, like chicken antibodies. Take a look at this list from Pierce: http://static.fishersci.com/cmsassets/downloads/segment/Scientific/pdf/Antibodies/binding.pdf
If that is not the case, then you may try to change the time and temperature of binding. I use 30 min at room temperature with rotation.