How to analyze data set of 53 micro rna genes in plants through SVM ?

I am working on long and short noncoding rnas in plants. I have a dataset of 53 microRNA genes in plants. Please suggest me how to analyse these micro rna genes through SVM technique. Please guide me.

01 February 2016 2,154 2 View

How can I build secondary structure in case of plants?

hello guys. I am working on noncoding rna (short & long both). which method is better to build secondary structure of ncRNA? what criteria should be taken for precursor sequence up &...

10 November 2015 4,199 1 View

Can you help me install PASS software?

How to install pass on a linux machine?

31 December 2013 6,161 7 View

Need help with pdb2gmx command in GROMACS

I am trying pdb2gmx command for MD simulation. but the output of pdb2gmx is not working properly in-case of multiple chains. the output file of pdb2gmx >>> .pdb or .gro was not generated. ERROR...

10 November 2013 8,584 5 View

Problem with pdb2gmx command in Gromacs?

I am working on molecular dynamics simulation in Gromacs. The output of the pdb2gmx is not working properly: only the .itp file and the .top file generate, not the .pdb/.gro files (output files).

09 October 2013 2,011 4 View

How do I compute the ligand binding site through PASS software?

Can anyone provide the full procedure for ligand binding site through PASS software?

07 August 2013 8,977 1 View

What is the base of CL- Ions in GROMACS?

I have a confusion for CL- ions in genion command.

06 July 2013 3,646 3 View

Which parameter is used with grompp>genion command in Energy Minimization in GROMACS?

I found another error through grompp_genion command: command used: grompp_d -f em -c 1chl-b4em.gro -p 1chl.top -o 1chl-4em-1.gro > grompp_b4em_agenion.output ERROR: Program grompp_d, VERSION...

06 July 2013 7,318 1 View

error in running a model in Abaqus

Excessive rotation of nodes in node set ErrNodeExcessRotation-Step1

17 August 2021 0 0 View

error in modelling model in Abaqus

Excessive rotation of nodes in node set ErrNodeExcessRotation-Step1

17 August 2021 0 0 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

MGL tools

20 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

flexibility of polymers chain

effect of double bond on the flexibility of polymers

07 April 2021 0 0 View