I need Gene Ontolgies with full descriptions of Molecular function, Biological process and cellular component. If there is any tool or alternative way to do please lemme know.. your suggestions are highly appreciated.
you can download these information using the ensembl plant database (http://plants.ensembl.org/index.html).
- Click on the biomart button on the top of the web page
- choose plant mart as database
-select Solanum lycopersicum as dataset
-click on attribute (on the left) then select external data and check the radio button for Go term
- click on result (top left) and download the compressed version of the tsv file
I hope this will help ...
best regards,
Vincent
The above solutions are quite powerful and flexible, but if you just want a file with GO annotations for all genes the easiest way is probably to use this website:
http://bioinfo.cau.edu.cn/agriGO/download.php
that provide direct link to download such an annotation file for several species (including tomato)
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