I can do docking with autodock vina. But it shows me several answer of same thing in several time. So, i am looking for some other free software or link by which i can make docking. Thanks in advanced.
Hey, Md Nazmussakib Shuvo I did not understand what exactly you are looking for, but the online software Mind the Graph has a service for subscribers that you can request a personalized illustration. Check their website. https://mindthegraph.com/
Hey Bruna Soldera I was looking for a free software by which i can dock ligand with my selected protein. I got some. If you know , you can also suggest me.
In order to find more information and for discussion I suggest you to join the Structural Bioinformatics and High Performance Computing (BIO-HPC) discord server at:
You can use SMINA (https://github.com/mwojcikowski/smina )or GNINA ( https://github.com/gnina/gnina ) docking tool for free. You may want to rescore the docked pose because the scores from docking tools are not very accurate (Article A Critical Assessment of Docking Programs and Scoring Functions
Unfortunately, I can't say because so far I only used MTiAutoDock with a single ligand for each run (here, depending on the server queue, this takes approx. an hour).