I already worked with graphene simulation in COMSOL Multiphysics, in my case it was for a 2D photonic crystal waveguide, you can find more information here: Conference Paper Reflectance and transmittance spectra of a photonic crystal ...
But in a nutshell, in your the Electromagnetic Waves, Frequency Domain interface, you can represent graphene using a surface current density condition or a custom material with complex conductivity. I used the Kubo formula to define the conductivity of graphene.
If you have any specific question, please let me know.
Thank you very much for answering the question. I tried to do the simulation in the RF module, frequency domain. The problem is that the thickness of the single-layer graphene is 0.34 nm, which causes the meshing complication. So, I used the transition boundary condition at the graphene interface as per the recommendation of the COMSOL Multiphysics guidelines, but I was not able to achieve the result. If I use the surface current density, then what will its value be? If I use the custom material, then there will be a meshing problem due to the thickness of the graphene layer.