I want to simulate a lipid in coarse grained Martini scheme, i used vmd tutorial in this link:
http://www.ks.uiuc.edu/Training/Tutorials/martini/rbcg-tutorial.pdf
after using its topology file in its tutorial files ,it could' nt set coordinates for some residues. i have guessed its topology file has problem because it only have charge of coarse grained beads not its length and ..., i see .itp files for Martini lipids that used in Gromacs have this values.
now i need a real( not what in tutorial files) Martini lipids topology file(.top file) as sample to correct my topology file.
Dear Tayebeh Ghorbi
To generate CG lipid topology, please see the links below
http://www.cgmartini.nl/index.php/tutorials-general-introduction/flowchartfile
http://www.cgmartini.nl/index.php/tutorials-general-introduction/bilayers
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