Optical Coherence Tomography data is available from spectrum analyzer that needs to be assembled in the form of image.
Dear Mehra,
The exact answer to your question depends on the raw format. When first reading the question, I thought you were talking about raw data from commercial OCT, as Spectralis or Bioptigen. In that case, the OCT Explorer from Iowa University would be great. Bioptigen provides ImageJ plugins to open their raw files. But for data straight out of the spectrum analyzer, you should precise which machine your using - and may be contact the manufacturer.
Best regards,
Michel
My old group in Lübeck wrote some stuff themself in LabView and Matlab. Not so hard at all if you know what you are doing.
Best regards,
Benjamin
Dear Mehra
How familiar are you with the basic steps of processing OCT signals, i.e. turning the measured spectra into A-scan profiles?
As Benjamin stated, it is not hard, but you need to know what you are doing.
If you already have some experience you might want to have a look into the open-source codes of the Sarunic group:
http://borg.ensc.sfu.ca/research/fdoct-gpu-code.html
But since that is a fairly complex framework, it might be easier to write your own code, depending on what you need.
ImageJ can be used and is Java scriptable. But you have to be more specific. What sort of data do you have and what is is that you want to measure. What is the scientific question that you need answered?
-Peter
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