This tool is applicable in case of reads generated through Pacific Biosciences and Oxford Nanopore. Can you suggest any tool that do same work using reads generated through illumina/solexa.
there are also a few tools for circular RNA detection (though you librarary should be treated with RNase R before hand to be meaningfull). CIRI, findCIRC, CIRCexplorer and so on: https://omictools.com/circular-rna-detection-category