Are there any studies or articles reporting the use of the TaqMan system, including primer pairs and probe, in qPCR assays for the detection of endogenous housekeeping genes in mammalian samples?
Presumably thousands, if not tens of thousands. This seems like an enormously vague question.
If by "endogenous housekeeping genes" you mean reference genes, then essentially any credible study using qPCR to measure gene expression in mammals (or indeed other sample types) will use reference genes. For qPCR there are really only two main methods: SYBR green, or hydrolysis probes (Taqman). So just go hunting for "qPCR gene expression mammals" and then check the methods to see if they used SYBR (cheap and cheerful) or taqman (more expensive).
What is it you want to know, specifically?
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