Any suggestions for a Structural Variation caller designed for Mate-pair data?

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Has anyone used the PatternCNV tool?

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Anyone have any idea about BWA MEM algorithm??

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Samarth Kulshrestha

Thanks a ton Tobias for your valuable suggestion.

Antony T Vincent

Dear Samarth,

Here are some links that maybe will help you.

https://github.com/svviz/svviz

http://www.ncbi.nlm.nih.gov/pubmed/25071822

http://www.ncbi.nlm.nih.gov/pubmed/25861968

http://bmcsystbiol.biomedcentral.com/articles/10.1186/1752-0509-7-S6-S8