Our lab is currently writing a manuscript on differential gene expression in RNA-sequencing data. As we're not a sequencing-based lab, we were hoping to find some free pathway analysis software. Any recommendations would be welcome! Thanks in advance.
1.Reactome pathway database
https://reactome.org/
2. Use also use R package - Bioconductor packages
3. chipster
You can try the DAVID functional annotation tool. It is free and easy to use.
By uploading the names of differently expressed genes, significantly regulated KEGG pathways can be revealed. The website is https://david.ncifcrf.gov/.
ConsensusPathDB! It compiles all sorts of sources (Reactome, Wikipathways, KEGG etc.). It also offers other options, like gene set enrichment or network modules analyses, as well as GO enrichment.
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