Hello everyone,
I'm currently working on analyzing RNA seq data and downloaded a fastq file from the NCBI website for practice. After using trimmomatic to trim my data, I faced challenges while attempting to align it with the human genome (hg38) using either Hisat2 or the STAR tool. Specifically, I encountered issues when running the 'make' command to build the Hisat2 executable.
I would appreciate any advice or guidance on resolving these challenges.
Thank you!