Shivakumara Bheemanaik

8 Questions 25 Answers 0 Followers

Questions related from Shivakumara Bheemanaik

What software can be used for drawing ORFs on genes as arrows?

I am trying to search for a software (preferably free) that could draw the arrows that represent ORFs on genes. I have multiple contigs from different bacteria with some ORFs of interest that I...

05 May 2014 5,856 0 View

What is the most suitable protocol for annotating protein from a raw sequence to a functional protein?

I want to know the best protocol for annotating protein from a raw sequence to a functional protein. There are many bioinformatic tools to perform this, but which one is best? If you mention the...

04 April 2014 8,192 2 View

How to perform Virtual DNA sequencing?

I am trying to learn how to perform virtual DNA sequencing procedure that includes base calling, sequence assembly, mapping assembly, and contig mapping. Please suggest a simple way of performing...

01 January 2014 9,265 2 View

Which is the best method for understanding electrostatic interactions in biomolecular systems?

While simulating protein-ligand interactions, which is the best method for understanding electrostatic interactions?

12 December 2013 6,262 10 View

What is the best chromatography data analysis software?

I have to demonstrate the analysis of chromatography data to students using a software. Can somebody suggest me which is the suitable software that I can download freely and use for the...

12 December 2013 9,990 1 View

How does one assign bases to chromatogram peaks?

What the best program to perform base calling?

12 December 2013 5,512 2 View

Proper choice of precipitants for protein crystallization?

I am trying to understand how to chose a precipitant for protein crystallization. What should be the basis for choosing a precipitant? The size of the protein is around 100 kDa and it exists as...

11 November 2013 2,847 3 View

Could someone suggest a good text book for teaching research methodology?

I have to teach research methodology for Master degree students. This includes review of literature, data analysis and scientific writing. Please suggest good text books to teach this seminar.

10 October 2013 6,296 8 View