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Questions related from Eszter Ari
Please suggest a website, API, or other solutions to sequence similarity searches on many (all available) metagenomic libraries without downloading the metagenomic reads or assemblies. Thank you
09 June 2023 6,795 2 View
We would like to analyse thousands of E. coli genomes and identify orthologous genes. Before this we would like to filter the bad quality genomes by BUSCO (https://busco.ezlab.org/). What % of...
16 November 2020 5,261 3 View
I have a large phylogenetic tree and a list of tip names for which I would like to know their closest relatives (based on the tree). The tree has polytomic nodes as well. Can you help me to solve...
15 June 2020 1,373 0 View
Dear Community, I would like to reconstruct the phylogeny of 16,000 E. coli strains based on their genome sequences. What do you think about the following concept? 1. ORF prediction in all...
17 September 2019 5,154 9 View
At least I cannot find them on Ensembl or USCS. I know some specific databases for tRNAs like tRNAdb and GtRNAdb. But I am really suprised that there are no tRNAs in the reference human genome...
18 September 2015 2,297 1 View