16 Questions 13 Answers 0 Followers
Questions related from Ashwani Kumar
I have a query regarding Processing of Fastq to Ubam file and then to vcf.gz file, I followed the same gatk guideline for conversion of paired end fastq files to .unmapped.bam files. and then...
01 February 2022 5,370 2 View
I want to extend my MD job from 100ns to 200ns. what changes should be applied in md.mdp and .tpr file and my another question is that usually how much time will be taken by the server of 64...
03 September 2020 728 3 View
I used LigParGen server to generate ligand topology but I dont know what changes I have to do in .itp file. when I issued this command: >gmx grompp -f ions.mdp -c solv.gro -p topol.top -o...
23 May 2020 1,827 0 View
I have a pdb file of docked complex of protein and ligand from patchdock, but there is an error occurring when I am importing it to LigPlot.
26 February 2019 1,038 14 View
I have approx. 150 protein ligands and want to dock all 150 protein ligand on single RNA at a time. Is there any tool available for this particular purpose.
22 February 2019 8,183 2 View
Q-How can we construct RBP-miRNA interaction base gene expression regulatory network from CLIP-seq ,RNA-seq and miRNA seq data?
05 June 2018 3,220 3 View
Can anyone suggest me which machine learning tool are best for applying SVM techniques for pattern recognition from image data
21 June 2016 5,955 11 View
I have a BLAST output file with lots of sequences but I would like to extract sequences only with the keyword "Sequences producing". I don't want sequences with keywords no Hit-found. I have a...
24 March 2015 9,833 7 View
I am working on transcriptomics data of medicinal plant and try to find potent miRNA target for this I want standalone PsRNA or similar type of tool whose GUI is available but the size of my data...
30 January 2015 6,744 2 View
There is great future in direction of treatment of AD with Acetyl-l-carnitine and Omega-3. I want to know the physicochemical and biological role of these two compounds
12 November 2014 4,127 1 View
Can anyone elaborate how the drug resistance mechanism of cancer is consequence of multipathway connectivity.
03 November 2014 9,644 6 View
Substance-P is an example of peptide neurotransmitter present in hippocampus, neocortex region of brain which involved in perception of pain. I want to know is any link between this...
24 April 2014 9,519 2 View
Why is the active site of very active enzyme buried?
21 April 2014 3,496 6 View
Is there any convincing evidence that aluminium increases a person's risk of developing Alzheimer's disease?
21 April 2014 4,234 7 View
Glial cells are found in the central nervous system which is responsible for conversion of glutamate (an amino acid neurotransmitter) into glutamine because excess of this neurotransmittor have...
19 April 2014 7,928 1 View
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15 April 2014 3,936 3 View
