Ashwani Kumar

13 Questions 11 Answers 0 Followers

Questions related from Ashwani Kumar

Q= Query for conversion of paired end reads R1 and R2 in Fastq.gz format to uBam format?

I have a query regarding Processing of Fastq to Ubam file and then to vcf.gz file, I followed the same gatk guideline for conversion of paired end fastq files to .unmapped.bam files. and then...

01 February 2022 5,340 2 View

How to extend MD run for 100ns to 200ns in GROMACS?

I want to extend my MD job from 100ns to 200ns. what changes should be applied in md.mdp and .tpr file and my another question is that usually how much time will be taken by the server of 64...

03 September 2020 662 3 View

How to prepare protein-ligand complex pdb for generating 2-D figure in LigPlot?

I have a pdb file of docked complex of protein and ligand from patchdock, but there is an error occurring when I am importing it to LigPlot.

26 February 2019 973 14 View

How to dock and simulate multiple protein ligands on single RNA binding site simultaneously?

I have approx. 150 protein ligands and want to dock all 150 protein ligand on single RNA at a time. Is there any tool available for this particular purpose.

22 February 2019 8,144 2 View

Anyone please tell me how to built RBP-miRNA interaction regulome model?

Q-How can we construct RBP-miRNA interaction base gene expression regulatory network from CLIP-seq ,RNA-seq and miRNA seq data?

05 June 2018 3,173 3 View

What is the best tool for pattern recognition of image data for applying svm?

Can anyone suggest me which machine learning tool are best for applying SVM techniques for pattern recognition from image data

21 June 2016 5,906 11 View

How can I isolate a fasta sequences with a specific keyword with perl?

I have a BLAST output file with lots of sequences but I would like to extract sequences only with the keyword "Sequences producing". I don't want sequences with keywords no Hit-found. I have a...

24 March 2015 9,779 7 View

What is the role of Acetyl-l-carnitine in AD?

There is great future in direction of treatment of AD with Acetyl-l-carnitine and Omega-3. I want to know the physicochemical and biological role of these two compounds

12 November 2014 3,976 1 View

Is drug resistance of cancer a clinical consequence of multipathway connectivity?

Can anyone elaborate how the drug resistance mechanism of cancer is consequence of multipathway connectivity.

03 November 2014 9,601 6 View

Why is the active site of very active enzyme buried?

21 April 2014 3,459 6 View

What is the role of aluminium metal and Alzheimer's disease?

Is there any convincing evidence that aluminium increases a person's risk of developing Alzheimer's disease?

21 April 2014 4,089 7 View

What is the role of glial cells in Alzheimer's disease?

Glial cells are found in the central nervous system which is responsible for conversion of glutamate (an amino acid neurotransmitter) into glutamine because excess of this neurotransmittor have...

19 April 2014 7,886 1 View

Why is fragment assembly of raw DNA sequence very difficult?

15 April 2014 3,894 3 View