Animesh Sen

8 Questions 10 Answers 0 Followers

Questions related from Animesh Sen

Which program and how can I combine/merge phylogenetic trees constructed by Neighbour joining, Maximum Likelihood methods ?

I have constructed phylogenetic tree of 16s rDNA sequence by Neighbour joining, Maximum Likelihood, Maximum Parsimony methods by MEGA with Bootstrap value. I want to combine all the three...

06 January 2022 642 4 View

How do I add/display Likelihood value using BEAST and Figtree on phylogenetic tree?

I have constructed phylogenetic tree by Bayesian inference method using BEAST software and analysis the tree using Fig Tree. But I didn't find, how to display the Likelihood vale using Fig Tree on...

03 January 2022 4,121 3 View

Do Cyanobacteria have endosymbiotic bacteria ?

The range of thallus structure of Cyanobacteria vary from unicellular to multicellular filamentous types. They are also larger in size than other bacteria. Is there any report on endosymbiotic...

17 February 2021 4,833 2 View

How to separate bacterial contamination from my target bacterial whole genome sequence ?

After analysing the NGS data ( Illumina reads), I have got a contaminant bacteria (marine Bacteria) along with my target bacteria ( Cyanobacteria). The total size of the genome is 14 MB. The...

08 February 2021 473 4 View

How to make a single circular Chromosome/DNA from too many contigs after genome assembly?

Dear all, I am working on a whole genome sequence analysis of a Cyanobacteria strain. After sequencing I have got large number of Illumina reads (150 bp in length) and after trimming...

26 June 2020 6,042 0 View

Is there any available drug in the market, which is derived from Cyanobacteria ?

Cyanobacteria are an ancient group of photosynthetic organisms from different habitats and particularly marine cyanobacteria, are a great resource of bio-active secondary metabolites. These...

10 November 2019 5,112 7 View

How to elute a metabolites from normal phase amino column, when the compound retain in stationary phase?

I have a exometabolites (yellow colour) in saline medium (containing 25 g/l NaCl). When I try to purify by using normal phase amino column the metabolites are retain into the column and I unable...

07 May 2019 5,083 3 View

Dear all, I am a beginner of MrBayes software. How can I make Bayesian analysis of phylogeny of 16S rDNA sequences by using MrBayes?

I have the NEXUS file of Sequences.

01 December 2018 8,346 3 View