Ahmer Bin Hafeez

4 Questions 1 Answers 0 Followers

Questions related from Ahmer Bin Hafeez

Why BLAST Ring Image Generator (BRIG) not showing some genomes in the ring image?

I am making a circular map with BRIG where I use multi-fasta files as a reference and 5 draft genomes as queries. The problem is that I don't get rings for my specific genomes, though BRIG doesn't...

27 May 2023 9,580 0 View

How to know if the assembled bacterial genome is circular or linear?

Hello, I performed De Novo assembly of bacterial species. How to know If the assembled genome is circular or linear. Thanks.

11 August 2022 2,511 2 View

What if the genome assembly of approximately 4MBs have large number of contigs i.e. 131?

How to improve the genome quality of the assembly that has such a large number of contigs. The genome size is approx ~4Mb. Is it normal to have such a large number of contigs? or if not what...

30 June 2022 9,870 0 View

What if BLAST results show similar Percentage , query coverage, e value with more than 3 species?

I did 16srRNA sequencing (sangar platform) of PCR amplicons. Did trimming of forward and reverse chromatogram reads and merged them using HVDR Fragment Merger Tool using different parameters. With...

11 April 2022 9,310 3 View