Aasim Majeed

8 Questions 9 Answers 0 Followers

Questions related from Aasim Majeed

Require suggestion on calculating Mutation Response Index for determining mutational role on bias?

I am working on codon usage bias on my species. While other indices and analysis have been carried out successfully, I have a confusion regarding the MRI calculation. MRI = SCS - CSCS For...

20 November 2019 3,223 1 View

Query about Mratio test and inferring genetic bottleneck in Populations?

I conducted Mratio analysis on my data set using M_P_Val.exe . It gave me following result; Average M = 0.110098 Please wait... 0% of the time you expect a smaller ratio at equilibrium. Using...

21 May 2019 1,660 3 View

What is the difference between M and Mc while using Mratio test for finding genetic bottle neck?

The value of M defines if a population has undergone recent reduction. There is another term called as critical M or Mc apart from M. What does it mean and how it is related to M. Thanks

04 May 2019 607 0 View

Is there any pipeline for detecting, quantifying and comparing alternative splicing from RNA seq data of plants?

I need to detect, quantify, identify differential splicing, and compare the alternative splicing across different RNA seq datasets of plants. I am the beginer in this field. Please suggest the...

05 February 2016 1,670 2 View

Can anyone tell me about the bet tools for alternative splicing detection and quantification?

From the transcriptomic data of a plant generated under different physiological conditions,I need to analyze the alternative splicing including its quantification. What insilico strategy would...

04 February 2016 10,049 2 View

How can I perform transient expression using Agrobacterium?

In the literature people have used agrobacterium mediated transformation of protoplasts for genome editing via CRISPR-Cas9 technology to transiently express the sgRNA-Cas9 cassette. For stble...

12 October 2015 2,563 4 View

Is there any host gene in wheat or barley that confers susceptibility to Bipolaris sorokiniana?

Bipolaris sorokiniana is a biotrophic fungi causing spot blotch in wheat and barley. Do any host gene help this fungus during infection.

09 June 2015 3,109 2 View

Are there any known genes in crops especially in wheat and rice that help pathogen during infection?

I need to know about any host genes that promote pathogen infection.

02 June 2015 7,367 3 View