Will DNAsp and MEGA X give the same results?

My MEGA 11 software closes on its own when I am running a phylogenetic analysis in the 1000 bootstrp?

I have ran the analysis a hundred times now. Still after like 200-300 replicates my software stops analysing or just closes on its own.

26 May 2024 6,125 4 View

What is the different of topology view and ordinary view in MEGA X's phylogeny?

I have been running my phylogeny tree in MEGA X. My phylogeny tree doesn't seem to have any major differences between species in plain view, but the branches are becoming more clearly divided and...

16 May 2024 1,478 1 View

MEGA X GenBLAST form within an alignment file .mas gives URI error?

Recently I have recurring issue with MEGA X when I genblast a seq from an alignment .mas file. I receive a SUBMITTED URI TOO LARGE The length of the requested URL exceeds the capacity for this...

18 April 2024 6,173 0 View

How to increase bootstrapping values of a phylogenetic tree?

I want to establish a phylogenetic relationship of our fungal species of interest along with the other fungal species belonging to the same order (Hypocreales). In order to perform this, we have...

22 January 2024 9,174 5 View

Hi Does anyone know how to format an input file for MEGA X mutation analysis?

18 December 2023 4,263 3 View

I have a question about concatenating sequence runs in MEGA X. Can you assist me with this?

I concatenated four sequences. Can I find the best model for the concatenated sequences and then run the maximum likelihood tree with the best model in MEGA X?

14 December 2023 7,498 0 View

I want to ask how do i select HKY MODEL IN MEGA?

Can some one please tell me what can i do? or do I select some other model?

05 December 2023 8,491 0 View

How to change RAxML file extension bootstrap.tree to mega file?

I drew a sequence tree of Newcastle birds with the cipres website. How can the desired tree be viewed graphically in the Mega software?

23 October 2023 8,059 0 View

How to remove stop codon from a full mitogenome sequence?

Hi. This is my first time working with a full mitochondrial genome. This sequence was sequenced using Illumina and its consensus was produced using Geneious prime. My questions are: 1) After...

26 September 2023 7,654 3 View

Coupling J-Model selection and MEGA?

I want to build a tree with my desired sequences and for that I am running the aligned sequences in J-Modeltest 2.1.10 for the best model selection and got TIM1+I .However MEGA have limited...

19 July 2023 9,121 0 View