I have ran the analysis a hundred times now. Still after like 200-300 replicates my software stops analysing or just closes on its own.
does it happen on smaller bootstrap numbers? If it's on windows try looking at the RAM usage, maybe it gets out of memory and shuts down.
No, It doesn't occur on smaller bootstrap number. I can try checking RAM usage.
Another possibility is that the model you use is converging on infinity, which will always shut down a run. Is your data too sparse to allow convergence?
Do you get a message when it closes?
No, I don't get any message. The software collapases on itself without any warning.
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