In the Schrödinger Maestro (free version) , when I am trying to preprocess a nanostructure by assigning zero order bond in the Protein preparation option, it is showing error. Can anyone help me to solve this problem?
Dear Sen,
The structure you've taken seems to be not a protein. It's a ligand, and for a ligand, you can use the LigPrep tool.
Both won't work until you have a licence for the full version.
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