8 Questions 16 Answers 0 Followers
Questions related from Subhadeep Sen
What will be the best tutorial to run md stimulation on gromacs for a beginner? Can anyone help me regarding this issue.
15 April 2023 3,729 3 View
In the Schrödinger Maestro (free version) , when I am trying to preprocess a nanostructure by assigning zero order bond in the Protein preparation option, it is showing error. Can anyone help me...
05 April 2022 5,230 1 View
What is the grid spacing that autodock vina used 0.375 or 1 angstrom? Some of the cases many have told that autodock vina used spacing 0f 1 angstrom but in some cases it is written as 0.375. So I...
22 March 2022 9,008 3 View
I was trying to do docking study with some proteins like 6LU7, 6W79 in Autodock. But every time in the time of running AutoDock after the AutoGrid, this error message is coming "error: 2137...
27 January 2022 9,352 4 View
I was trying to get the RMSD score of the protein having a ligand with the same protein after docking with that ligand. But getting zero score every time in Pymol. How to get rid of this problem?...
26 January 2022 1,557 6 View
I am trying to dock a ligand with protein 6LZG. But, being a newcomer in this docking field, could not get the active sites of that protein. So, Can anyone provide me the active sites of 6LZG...
22 January 2022 2,859 11 View
I was tried to dock Cucurbit[7]uril with protein in Autodock vina, but the ligand structure i.e., the structure of Cucurbit[7]uril was planar (taken from the pubchem or other website everywhere...
20 January 2022 2,230 3 View
I have synthesized SnFe2O4 nanoparticles by coprecipitation method. Which should have same structure as Fe3O4. But the XRD result is surprising, it is showing that the highest intensive peak which...
15 July 2021 5,655 18 View
