Hi,
I am working with Arabidopsis and want to do ChIP-seq. I isolated chromatin from 14-day old seedlings and did sonification. After reverse crosslinking with 4 microliter of NaCL 5 M (ON), 2 microliter RNase (10 mg/ml) and 1 microliter Proteinase K (20/ml) treatments for 2 h each, I ran the purified chromatin (with Vayzme beads) on the gel and I see a thick band on the size of 500 bp instead of seeing smear. What can be the reason? Thank you for your help in advance.