Samples of Nitraria tangutorum, groundwater and soil water were collected in the arid area of Northwest China. Generally, there is no hydrogen and oxygen isotope fractionation when roots absorb water. However, this study found that the isotope fractionation occurs when roots absorb water, and the hydrogen isotope fractionation is more obvious. The vegetation in arid area will redistribute water from the moist soil layer to the roots in the arid soil layer to alleviate the root drought stress caused by too low soil water. The Nitraria tangutorum in this study area absorbed more water molecules containing 1H from groundwater and released them into soil through hydraulic redistribution, resulting in much more negative hydrogen isotope of soil water. Why did Nitraria occur such obvious isotope fractionation? Is the negative isotope of soil water caused by hydraulic redistribution? What does this have to do with the ‘two water worlds’ hypotheses?