We use one probe with orange (Alexa555) dye to bind to the centromere of one chromosome and another probe with green (Alexa488) dye to bind to a gene. But in some nuclei we can see 5-10 spots that show both colours. However, in other nuclei in the same slide, there are only 2 orange and 2 green spot separately, as we expect it. What could cause this result?

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