Where to find the p-values associated to each SNP in a GWAS done with a single-step GBLUP using BlupF90 software?

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Breno de Oliveira Fragomeni

As Dr. Wolc said, there is no p-value for Single-Step GBLUP in BLUPF90 family. We were planning to work on that , but I don't think it is a priority right now.

François Allal

Thank you for your answers, I had a discussion with Andres Leggara on that purpose that confirmed me that no p-values are given in BlupF90. We'll compare with SNP effect in PLINK

Wenshui Xin

if you use BLUPF90 to perform the GWAS analysis, you can use the effects of each SNP for target traits to investigate the relationship between your target traits and the genotype.