Where to download gene expression dataset?

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Bahman Sadeghi

There are various databases depending on the type of target genes your are working on, pathology, etc.

But the following may be useful:

1. The Cancer Genome Atlas (TCGA) RNA-seq count data: the NIH GDC data portal (portal.gdc.cancer.gov/)

2. I have done a gene enrichment analysis before, using the Genotype-Tissue Expression (GTEx) data. Quite useful form the Broad Institute!

Check: www.gtexportal.org

Just click on the datasets menu and download.

3. UC and Broad Institute have also rich gene datasets:

https://software.broadinstitute.org/cancer/software/genepattern/datasets

Nuno A Fonseca

To complement the above reply.

Gene expression Atlas: https://www.ebi.ac.uk/gxa/

Array Express: https://www.ebi.ac.uk/arrayexpress