Hi,
I am wondering what are the files that should be prepared? how? commands? that enables me to perform MD simulations using AMBER on Supercomputer.
Hi Muhammad,
Here you can find a basic tutorial to start your learning.
http://ambermd.org/tutorials/basic/tutorial1/
http://ambermd.org/tutorials/
&
http://ringo.ams.stonybrook.edu/index.php/Rizzo_Lab_Information_and_Tutorials
By 'super computer' did you mean parallel runs ?
Kolattukudy P. Santo yes, parallel runs using multiple processors.
Thank you all. I'll check the attached the links which seem useful. Wish you all a merry Xmas!
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