Hi,

I am looking for a method -preferably microarray- to determine the expression levels of all annotated human lncRNAs in a sample.

I've seen some microarray platforms (ArrayStar, Agilent), however, they are either a service or do not include detailed information.

One option is to do RNA-seq, but sequencing lncRNAs has some limitations. Specifically, our samples are human stool samples and human RNA in stool is highly degraded. Stool samples also contain bacterial RNA, which could be another drawback for sequencing.

If anyone previously conducted similar work or has some suggestions, any help is appreciated.