What institution does the author state when publishing an article, if they have left the institution where they carried out the research?

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Jasmin Omercic

If you are not in an institution anymore then you may write 'independent researcher' until you affiliate with another institution.

Emmanuel Sokefun

But what if the entire work was carried out in the former institution?

Neeraja Sankaran

I give the name of the institution that I feel supported me most when I was working on the paper

From these responses, I understand that there is no agreed rule guiding institutional affiliation. I feel it is important that there is a congress of scientists in which this issue is discussed, and rules laid out to guide the issue of institutional affiliation.