actually i want to do virtual screening of aptamers and proteins in such a way that i placed aptamers as a ligand and protein as a receptor and want to do docking and then further virtual screening my aptamers are DNA based but the problem is this i couldnot find any good software for this. i tried autodock vina iGEMDOCK, pyrx and many others like this but it didnot work. can anyone please suggest software for this ?
thanks in advance.