Can anyone advise me on a problem with phosphoserine residue in MD simulation?

I am working with a protein having phosphorylated serine residue. During topology generation in Gromacs I faced this problem with the above mentioned residue. Please suggest a forcefield, which...

31 December 2013 9,311 2 View

Can coarse grained molecular dynamics (CGMD) simulation be applied to study Protein Interaction stability?

I am working with a system consisting of two protein molecules. My aim is to predict the stability of complex through molecular dynamics.

08 September 2013 8,628 2 View

Diffrence in calculated binding free energy by MMPBSA.py and mm_pbsa.pl

I have calculated binding free energy of two proteins using both MMPBSA.py and mm_pbsa.pl script.I am using 500 frames generated during 1ns simualation under NPT condition.In case of MMPBSA.py i...

03 April 2013 2,404 0 View

Problem with Amber Parameter generation of Protein containing Mg+2 AND GTP

I am getting an error about bond and angle parameter of MG -O-P5 in Amber. I don't know how Mg ion is treated along with GTP in protein complex. I have generated separate parameters for GTP and...

03 April 2013 9,438 0 View

Guidelines for survey (question type) analysis?

Hi. Please tell me what guidelines should i need to follow for questionaries' type research work in India. It is not hospital based work, we are conduction basic institutional based qualitative...

03 March 2021 2,037 3 View

How to access MSCI KLD Stats and Sustainalytics?

Hello all, I'm currently working on my undergraduate thesis and I'm having difficulties trying to access KLD Stats and Sustainalytics because my campus Airlangga University and apparently other...

02 March 2021 8,525 1 View

Ideas for Phd's Thesis on pricing (Marketing)?

Hi everyone, I'm studying Marketing and I would like to write my PhD thesis on the topic of pricing. Any specific ideas?

02 March 2021 9,706 5 View

No title

02 March 2021 3,060 3 View

No title

02 March 2021 932 1 View

How to calculate BREQ 3 questionnaire?

how to calculate BEHAVIOURAL REGULATION IN EXERCISE QUESTIONNAIRE BREQ 3 ,which contain 24 questions and each question has 5 answers (0- Strongly disagree , 1-disagree, 2- Neither agree nor...

02 March 2021 811 3 View

Please suggest a good text book for "Research Methodology in Life Sciences". Which book would be good for PhD Scholars?

Please provide Book Title and author name

02 March 2021 9,059 3 View

How does Scientist/RG community evaluates a case study article and the impact of it on a researcher career?

An article that is published as a case study in the SJR listed journal. How much value is added to a researcher career? How it is evaluated by a scientific researcher/University admission...

02 March 2021 9,661 3 View

Could any one guide me, to write research proposal for grant? ?

We have one plant, the local people using this for controlling blood sugar, the toxicity and antidiabetic activity of the plant is not reported yet, please guide from whag should be the process ?...

02 March 2021 2,300 1 View

How to regulate SSCP temperature in simple PAGE?

I'd like to perform single-strand conformation polymorphism (SSCP) in my thesis, however I cannot control the temperature of the vertical PAGE since we are using the conventional tanks. Is there a...

02 March 2021 9,157 1 View