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I am working with a protein having phosphorylated serine residue. During topology generation in Gromacs I faced this problem with the above mentioned residue. Please suggest a forcefield, which...
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I am getting an error about bond and angle parameter of MG -O-P5 in Amber. I don't know how Mg ion is treated along with GTP in protein complex. I have generated separate parameters for GTP and...
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