I have a system described below
cation.pdb
anion.pdb
cation.mol2
anion.mol2
(cation+anion).pdb (300 each obtained from packmol)
frcmod.anion
frcmod.cation
How can I obtain (cation+anion).prmtop and (cation+anion).inpcrd of Amber and convert them into Gromacs format.
Thanks, in anticipating your kind responds.