Does anyone have experience or recommended paper about research at unsaturated (unconfined) aquifer (groundwater-surface water interaction), I will appreciate your answers.
For such a general subject, my advice is to look for a text book rather than a paper. I appreciated The Handbook of Groundwater Engineering, from Jacques W. Delleur, a thick book which covers the basic aspects of unsaturated soils hydrogeology. You will find many other resources on Google scholar, where I have found a chapter that seems to cover the subject quite well.